2013/Citations and Scholarly Markdown

Session on Scholarly Markdown / Web Citations
(etherpad notes from our session, now represented below)

Markdown for Science / Scholarly Markdown
 * https://github.com/karthikram/markdown_science

Tools I use (znmeb):
 * RStudio R Markdown: http://www.rstudio.com/ide/docs/authoring/using_markdown
 * Has LaTeX interfaces, HTML
 * Video: http://jeromyanglim.blogspot.com/2012/07/video-knitr-rmarkdown-rstudio.html
 * Dexy: http://jeromyanglim.blogspot.com/2012/07/video-knitr-rmarkdown-rstudio.html

Reference / Citation Management Tools
 * Zotero http://www.zotero.org/
 * Mendeley http://www.mendeley.com/
 * CSL: Citation Style Language http://citationstyles.org/

Open Annotations
 * http://openannotation.org/
 * http://www.w3.org/community/openannotation/
 * http://wikileaks.org/Transcript-Meeting-Assange-Schmidt#739

some work i did with plos/#oahack peeps last year:
 * http://dev.sciencemarkup.org/
 * try it/see example markup at http://dev.sciencemarkup.org/tools.html
 * http://jessykate.com/2012/03/31/science-markup/
 * http://jessykate.com/2010/08/06/open-science-microformats-initial-thoughts/
 * http://jessykate.com/2010/07/31/activity-streams-for-open-science/


 * Digital Object Identifier (DOI) http://www.doi.org/index.html

Example of JSON "Open Annotation"-ish reference targetting:
 * https://test.hypothes.is/api/annotations/-9GPzhrWRyuzILKT7wcdRw

h-cite microformat
 * http://microformats.org/wiki/h-cite